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1.
Int J Syst Evol Microbiol ; 73(11)2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37917152

RESUMO

A novel Gram-stain-negative, aerobic, rod-shaped bacterium, designated as HL-NP1T, was isolated from the surface water of the northwestern Pacific Ocean after enrichment cultivation using the organic phosphorous compound of 2-aminoethylphosphonate. Phylogenetic analysis based on 16S rRNA gene sequences showed that the strain belonged to the genus Jiella, with the highest similarity to Jiella pacifica 40Bstr34T (98.7 %). The complete genome sequence of strain HL-NP1T comprised a circular chromosome of 5.58 Mbp and two circular plasmids of 0.15 and 0.22 Mbp. Comparison of the genome sequences between strains HL-NP1T and J. pacifica 40Bstr34T revealed that average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values (88.0, 86.4 and 33.9 %, respectively) were below the recommended cut-off levels for delineating bacterial species. Strain HL-NP1T showed optimal growth at 30 °C, pH 6.5-7.0, with 2.0-2.5 % (w/v) NaCl. The sole respiratory quinone was ubiquinone-10. The predominant fatty acid was summed feature 8 (C18 : 1 ω6c and/or C18 : 1 ω7c). The polar lipids comprised diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylmonomethylethanolamine, an unidentified aminolipid and four unidentified lipids. The G+C content of the genomic DNA was 65.1 %. Based on phylogenetic, genotypic, phenotypic and chemotaxonomic data, strain HL-NP1T is proposed to represent a novel species of the genus Jiella, for which the name Jiella pelagia sp. nov. is proposed. The type strain is HL-NP1T (= KCCM 90499T = JCM 35838T).


Assuntos
Alphaproteobacteria , Organofosfonatos , Composição de Bases , Ácidos Graxos/química , Oceano Pacífico , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , DNA Bacteriano/genética , Técnicas de Tipagem Bacteriana , Água do Mar
2.
Viruses ; 15(10)2023 10 07.
Artigo em Inglês | MEDLINE | ID: mdl-37896838

RESUMO

Cold-active bacteriophages are bacterial viruses that infect and replicate at low temperatures (≤4 °C). Understanding remains limited of how cold-active phage-host systems sustain high viral abundance despite the persistently low temperatures in pelagic sediments in polar seas. In this study, two Pseudoalteromonas phages, ACA1 and ACA2, were isolated from sediment core samples of the continental shelf in the western Arctic Ocean. These phages exhibited successful propagation at a low temperature of 1 °C and displayed typical myovirus morphology with isometric icosahedral heads and contractile tails. The complete genome sequences of phages ACA1 and ACA2 were 36,825 bp and 36,826 bp in size, respectively, sharing almost the same gene content. These are temperate phages encoding lysogeny-related proteins such as anti-repressor, immunity repressor and integrase. The absence of cross-infection between the host strains, which were genomically distinct Pseudoalteromonas species, can likely be attributed to heavy divergence in the anti-receptor apparently mediated by an associated diversity-generating retroelement. HHpred searching identified genes for all of the structural components of a P2-like phage (family Peduoviridae), although the whole of the Peduoviridae family appeared to be divided between two anciently diverged tail modules. In contrast, Blast matching and whole genome tree analysis are dominated by a nonstructural gene module sharing high similarity with Pseudoalteromonas phage C5a (founder of genus Catalunyavirus). This study expands the knowledge of diversity of P2-like phages known to inhabit Peudoalteromonas and demonstrates their presence in the Arctic niche.


Assuntos
Bacteriófagos , Pseudoalteromonas , Bacteriófagos/genética , Pseudoalteromonas/genética , Genoma Viral , Lisogenia , Genômica , Filogenia
3.
Artigo em Inglês | MEDLINE | ID: mdl-37561014

RESUMO

A Gram-stain-negative, facultatively anaerobic, non-motile, rod-shaped bacterial strain, designated HL-MP18T, was isolated from Arctic seawater after a prolonged incubation employing polypropylene as the sole carbon source. Phylogenetic analyses of the 16S rRNA gene sequence revealed that strain HL-MP18T was affiliated to the genus Roseovarius with close relatives Roseovarius carneus LXJ103T (96.8 %) and Roseovarius litorisediminis KCTC 32327T (96.5 %). The complete genome sequence of strain HL-MP18T comprised a circular chromosome of 3.86 Mbp and two circular plasmids of 0.17 and 0.24 Mbp. Genomic comparisons based on average nucleotide identity and digital DNA-DNA hybridization showed that strain HL-MP18T was consistently discriminated from its closely related taxa in the genus Roseovarius. Strain HL-MP18T showed optimal growth at 25 °C, pH 7.0 and 2.5 % (w/v) sea salts. The major cellular fatty acids were C18 : 1 ω6c and/or C18 : 1 ω7c (49.6 %), C19 : 0 cyclo ω8c (13.5 %), and C16 : 0 (12.8 %). The major respiratory quinone was ubiquinone-10. The polar lipids consisted of phosphatidylcholine, phosphatidylglycerol, an unidentified aminolipid and three unidentified lipids. The genomic DNA G+C content of the strain was 59.2 mol%. The phylogenetic, genomic, phenotypic and chemotaxonomic results indicate that strain HL-MP18T is distinguishable from the recognized species of the genus Roseovarius. Therefore, we propose that strain HL-MP18T represents a novel species belonging to the genus Roseovarius, for which the name Roseovarius pelagicus sp. nov. is proposed. The type strain is HL-MP18T (=KCCM 90405T=JCM 35639T).


Assuntos
Bactérias Anaeróbias Gram-Negativas , Polipropilenos , Rhodobacteraceae , Regiões Árticas , Rhodobacteraceae/classificação , Rhodobacteraceae/enzimologia , Rhodobacteraceae/genética , Rhodobacteraceae/isolamento & purificação , Genoma Bacteriano/genética , Bactérias Anaeróbias Gram-Negativas/classificação , Bactérias Anaeróbias Gram-Negativas/genética , Bactérias Anaeróbias Gram-Negativas/isolamento & purificação , Polipropilenos/metabolismo , Filogenia , RNA Ribossômico 16S/genética , Especificidade da Espécie
4.
Artigo em Inglês | MEDLINE | ID: mdl-36951926

RESUMO

A Gram-stain-negative, aerobic, rod-shaped bacterial strain, designated HL-LV01T, was isolated from the intestinal tract content of the Pacific white shrimp Litopenaeus vannamei. The 16S rRNA gene sequence of strain HL-LV01T showed that the strain was clearly a member of the genus Maribacter. According to the phylogenetic analyses, strain HL-LV01T was most closely related to the species Maribacter flavus KCTC 42508T with 98.2 % sequence similarity. The average nucleotide identity and digital DNA-DNA hybridization values between strain HL-LV01T and M. flavus KCTC 42508T were 80.6 % and 23.0 %, respectively, indicating different genomic species in the genus Maribacter. Strain HL-LV01T showed optimal growth at 35 °C, pH 7.0, and 2.5 % (w/v) sea salts. The major cellular fatty acids were iso-C15 : 0 (32.5 %), iso-C17 : 0 3-OH (22.3 %), and iso-C15 : 1 G (15.5 %). The major respiratory quinone was menaquinone-6. The polar lipids consisted of phosphatidylethanolamine, three unidentified aminolipids, and seven unidentified lipids. The genomic DNA G+C content of the strain was 39.8 mol%. The comprehensive phylogenetic, genomic, phenotypic, and chemotaxonomic results indicate that strain HL-LV01T is distinct from validly published species of the genus Maribacter. Hence, we propose strain HL-LV01T as a novel species belonging to the genus Maribacter, for which the name Maribacter litopenaei sp. nov. is proposed. The type strain is HL-LV01T (= KCCM 90498T = JCM 35709T).


Assuntos
Ácidos Graxos , Flavobacteriaceae , Ácidos Graxos/química , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , DNA Bacteriano/genética , Composição de Bases , Técnicas de Tipagem Bacteriana , Vitamina K 2/química
5.
J Nanosci Nanotechnol ; 19(8): 4715-4718, 2019 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-30913775

RESUMO

For the development of high-areal-capacity Li-S batteries, sulfur-coated separators were utilized between the cathode and anode. It was found that (1) the additional sulfur on the separator participated at the electrode reaction occurring in the cathode region, contributing to the improvement of the areal capacity of Li-S batteries, and (2) the areal capacity significantly increased with the mass ratio of sulfur on the separator (Ssep) to sulfur in cathode (S+). At the high Ssep/S+ mass ratio of 5.0, the Li-S cell delivered fourfold higher areal capacity of 4.28 mAh/cm² than that of the control cell, along with excellent capacity retention of 90% after 50 cycles, demonstrating that the new concept for Li-S cells could be highly advantageous in boosting the Li-S battery cell performance. The new approach can be widely applied to increase the areal capacity and volumetric energy density of Li-S batteries.

6.
J Nanosci Nanotechnol ; 18(10): 7142-7146, 2018 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-29954549

RESUMO

A series of disordered mesoporous carbons (DMC) are synthesized via the colloidal silica template method by varying the mass ratio of silica to maltose from 0.4 to 1.4. A gradual improvement in the surface area and porosity of the DMC is apparent with an increase in the ratio of silica to maltose. The capacitance of the DMCs tends to increase linearly with their surface area. In particular, the DMC synthesized at a mass ratio of 1.4 exhibits the largest surface area of 1,152 m2/g and the highest capacitance of 175.4 F/g, comparable to the capacitance of other porous carbons with large surface areas (>2,000 m2/g). This feature may be attributed to its unique structural properties, such as the high pore interconnectivity allowing for easy access of the electrolyte ions. We believe that a higher capacitive performance can be achieved through further optimization studies (e.g., searching for better carbon precursors and adjusting the mass ratio of silica to carbon precursor).

7.
J Nanosci Nanotechnol ; 18(10): 7259-7262, 2018 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-29954570

RESUMO

We present a novel approach for the synthesis of large-pore mesoporous carbon with a highly porous structure, based on an oil/water (O/W) emulsion templating method. For the formation of oil-in-water emulsions with nanoscale oil droplets, polyvinylpyrrolidone was used as an emulsifier. Mesoporous carbon materials with large mesopores were successfully synthesized via a three-step process: (1) polymerization in the oil-in-water emulsion, (2) filtration, and (3) carbonization. We confirmed that the pore size of the carbon can be significantly reduced through a modified O/W emulsion method. The mesoporous carbon materials prepared without an activation step exhibited an appreciable surface area (705 m2/g) and a noticeable capacitive performance of ∼100 F/g at 2.0 A/g. We believe that the approach presented here can be widely applied to the synthesis of mesoporous carbon using various carbon sources, and the structural properties of the mesoporous carbon can be improved through proper optimization.

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